Biblio

Found 10 results
Filters: Author is Vitalis, A. and Keyword is molecular dynamics  [Clear All Filters]
2025
Zhang Y., Vitalis A..  2025.  Benchmarking the robustness of the correct identification of flexible 3D objects using common machine learning models. Patterns. 6(1):101147.
Vitalis A., Winkler S., Zhang Y., Widmer J., Caflisch A..  2025.  A FAIR-compliant management solution for molecular simulation trajectories. Journal of Chemical Information and Modeling. XXX(YYY)
2023
Widmer J., Langini C., Vitalis A., Caflisch A..  2023.  Optimized reaction coordinates for analysis of enhanced sampling. The Journal of Chemical Physics. 159(1):015101-24.
2020
Cocina F., Vitalis A., Caflisch A..  2020.  SAPPHIRE-based clustering. Journal of Chemical Theory and Computation. 16(10):6383–6396.
2017
Bacci M., Vymětal J., Mihajlovic M., Caflisch A., Vitalis A..  2017.  Amyloid β fibril elongation by monomers involves disorder at the tip. Journal of Chemical Theory and Computation. 13(10):5117-5130.
Bacci M., Langini C., Vymětal J., Caflisch A., Vitalis A..  2017.  Focused conformational sampling in proteins.. Journal of Chemical Physics. 147(19):195102.
2015
Bacci M., Vitalis A., Caflisch A..  2015.  A molecular simulation protocol to avoid sampling redundancy and discover new states. Biochimica et Biophysica Acta (BBA) - General Subjects. 1850(5):889-902.
2014
Blöchliger N., Vitalis A., Caflisch A..  2014.  High-resolution visualisation of the states and pathways sampled in molecular dynamics simulations. Scientific Reports. 4:6264.
2012
Vitalis A., Caflisch A..  2012.  50 years of Lifson–Roig models: Application to molecular simulation data. Journal of Chemical Theory and Computation. 8(1):363-373.
Vitalis A., Caflisch A..  2012.  Efficient construction of mesostate networks from molecular dynamics trajectories. Journal of Chemical Theory and Computation. 8(2):1108-1120.